Habitat loss-induced tipping points in metapopulations with facilitation

Habitat loss is known to pervade extinction thresholds in metapopulations. Such thresholds result from a loss of stability that can eventually lead to collapse. Several models have been developed to understand the nature of these transitions and how they are affected by the locality of interactions, fluctuations or external drivers. Most models consider the impact of grazing or aridity as a control parameter that can trigger sudden shifts, once critical values are reached. Others explore instead the role played by habitat loss and fragmentation. Here we consider a minimal model incorporating facilitation between the individuals of the same species along with habitat destruction, with the aim of understanding how local cooperation and habitat loss interact with each other. A mathematical model incorporating facilitation and habitat destruction is derived, along with a spatially explicit simulation model. It is found that a catastrophic shift is expected for increasing levels of habitat loss, but the bifurcation becomes continuous when dispersal is local. Under these conditions, spatial patchiness is found and the qualitative change from discontinuous to continuous results are in agreement with previous studies on ecological systems. Our results suggest that species exhibiting facilitation and displaying short-range dispersal will be markedly more capable of avoiding catastrophic tipping points.     

Energy cost of locomotory activity in larval hookworms

Lipid changes in the infective third-stage larvae of Ancylostoma tubaeforme following measured periods of activity have been quantified. ‘Excessive’ activity (more than 16 activity régimes, or 8 h in neostigmine bromide) resulted in a significant (> 10%) depletion of the lipid reserves, especially from the anterior region of the intestine.     

Dynamics of the background impulse activity of neurons of the lateral vestibular nucleus in the norm and under vibrational influence

The background impulse activity (BIA) generated by neurons of the right lateral vestibular nucleus (LVN) of rats in the norm and under conditions of long-lasting general vibrational stimulation was subjected to computer analysis. Statistically significant changes in intragroup values of the mean BIA frequency were observed after 5 and 10 days with 2-h-long sessions of vibrational stimulation. Significant shifts in the distributions of LVN neurons by the level of regularity and dynamic types of BIA were observed 10 and 15 days with vibrational influences. Trends toward return of the intragroup mean value of the BIA frequency to the initial level were noticeable at the end of the stimulation period (15 days). Neirofiziologiya/Neurophysiology, Vol. 37, Nos. 5/6, pp. 424–431, September–December, 2005.     

Data-driven estimation of nitric oxide emissions from global soils based on dominant vegetation covers

Soils are a major source of global nitric oxide (NO) emissions. However, estimates of soil NO emissions have large uncertainties due to limited observations and multifactorial impacts. Here, we mapped global soil NO emissions, integrating 1356 in-situ NO observations from globally distributed sites with high-resolution climate, soil, and management practice data. We then calculated global and national total NO budgets and revealed the contributions of cropland, grassland, and forest to global soil NO emissions at the national level. The results showed that soil NO emissions were explained mainly by N input, water input and soil pH. Total above-soil NO emissions of the three vegetation cover types were 9.4 Tg N year⁻¹ in 2014, including 5.9 Tg N year⁻¹ (1.04, 95% confidence interval [95% CI]: 0.09–1.99 kg N ha⁻¹ year⁻¹) emitted from forest, 1.7 Tg N year⁻¹ (0.68, 95% CI: 0.10–1.26 kg N ha⁻¹ year⁻¹) from grassland, and 1.8 Tg N year⁻¹ (0.98, 95% CI: 0.42–1.53 kg N ha⁻¹ year⁻¹) from cropland. Soil NO emissions in approximately 57% of 213 countries surveyed were dominated by forests. Our results provide updated inventories of global and national soil NO emissions based on robust data-driven models. These estimates are critical to guiding the mitigation of soil NO emissions and can be used in combination with biogeochemical models.     

Comparison of Different Foreground and Background Selection Methods in Marker-Assisted Introgression

Three different methods for foreground selection and four different methods for background selection were compared in terms of the efficiency of marker-assisted introgression of a QTL allele from a donor line into a recipient line and also in terms of the recovery of the recipient genetic background. The results showed that for the introgression of a donor QTL allele, a direct selection on the QTL itself (when the QTL genotype can be directly identified) would ensure that the allele is successfully introgressed and rapidly fixed. However, when a direct selection on the QTL is not feasible, an indirect selection using two closely linked flanking markers can be used, which also shows similar results. For the recovery of the recipient genetic background, if the goal is to recover the whole genetic background of the recipient, genomic similarity selection or marker index selection would be the best choice: Only three generations of backcrosses were required to recover over 98% of the recipient genome. Whereas if the goal is to recover certain background traits of the recipient, MBLUP selection would give the best results, which achieved not only over 99% recovery of the recipient QTL alleles for the background traits after three generations of backcrosses, but also showed the best genetic improvement of these traits.     

Data implementation matters: Effect of software choice and LCI database evolution on a comparative LCA study of permanent magnets

Life cycle assessment (LCA) databases and software evolve. We analyzed to which extent software and evolving life cycle inventory databases affect the comparison of technology alternatives, using a comparative LCA on permanent magnets as a case study, with two selected software tools: CMLCA and Brightway LCA. We migrated the system models from the CMLCA to Brightway LCA software and alternated between the ecoinvent database versions 2.2 and 3.1 to 3.6 in the system background. When using ecoinvent v3.6 instead of v2.2, the change of the indicator results ranged from $-34\%$ to 283%. The evolution of the ecoinvent database impacted the absolute amounts of the characterized results and the relative performance between alternatives. The impact category with the highest variability was ionizing radiation, which even showed a ranking inversion with ecoinvent v3.4. In contrast, the impact of using CMLCA or Brightway was negligible because the same data and modeling assumptions caused percentage differences below 0.4%. During the semi-automated data migration to Brightway, we identified 23 environmental flows in the CMLCA model that were not paired with their corresponding characterization factors in the published study of reference. This error had led to an underestimation of 63% in the photochemical oxidation indicator of one of the alternatives. This underestimation relates to an interoperability issue regarding the nomenclature of environmental flows in software alternatives and is a matter of data implementation rather than an issue intrinsic to the selected software. Finally, we identified improvement opportunities for the transparency and reusability of LCA models. This article met the requirements for a Gold-Gold JIE data openness badge described at http://jie.click/badges .      

Management reference points to account for direct and indirect impacts of fishing on marine mammals

Reference points can help implement an ecosystem approach to fisheries management (EAF), by establishing precautionary removal limits for nontarget species and target species of ecological importance. PBR (Potential Biological Removal), developed under the U.S. Marine Mammal Protection Act (MMPA), is a limit for direct mortality for marine mammals, but it does not account for indirect effects of fishing due to prey depletion. I propose a generalization of PBR (called PBR*) to account for plausible changes in marine mammal carrying capacity (ΔK) from prey biomass decline relative to two example benchmarks: SSB_MSY (maximum sustainable yield biomass for all known prey species) or SSB_K (unfished prey biomass). PBR* can help identify when indirect fishing effects (alone, or combination with direct mortality estimates) may stymie MMPA objectives, and could inform catch limit estimates for target species that are also important as marine mammal prey. As a case study, I applied PBR* estimates to evaluate the possible combined direct + indirect effects of fishing on cetaceans in northeastern U.S. waters. Estimated distributions for ΔK were based on fish stock assessments and meta‐analysis of predator‐prey relationships from the mammalian literature. Based on this analysis, increased risk of marine mammal depletion due to indirect fishing effects was not evident, although this result must be interpreted cautiously given our limited understanding of cetacean diets and marine trophic dynamics. This study is intended to illustrate a possible practical approach for incorporating indirect fisheries impacts on marine mammals into a comprehensive management framework, and it raises several scientific and policy issues that merit further investigation.     

Comparative and experimental studies on the relationship between body size and countershading in caterpillars

Countershading is a gradient of colouration in which the illuminated dorsal surfaces are darker than the unilluminated ventral surface. It is widespread in the animal kingdom and endows the body with a more uniform colour to decrease the chance of detection by predators. Although recent empirical studies support the theory of survival advantage conferred by countershading, this camouflage strategy has evolved only in some of the cryptic animals, and our understanding of the factors that affect the evolution of countershading is limited. This study examined the association between body size and countershading using lepidopteran larvae (caterpillars) as a model system. Specifically, we predicted that countershading may have selectively evolved in large-sized species among cryptic caterpillars if (1) large size constrains camouflage which facilitates the evolution of a trait reinforcing their crypsis and (2) the survival advantage of countershading is size-dependent. Phylogenetic analyses of four different lepidopteran families (Saturniidae, Sphingidae, Erebidae, and Geometridae) suggest equivocal results: countershading was more likely to be found in larger species in Saturniidae but not in the other families. The field predation experiment assuming avian predators did not support size-dependent predation in countershaded prey. Collectively, we found only weak evidence that body size is associated with countershading in caterpillars. Our results suggest that body size is not a universal factor that has shaped the interspecific variation in countershading observed in caterpillars.     

Cold hardiness of the overwintering black carpenter ant

Abstract Cold hardiness was investigated in overwintering field nests of the black carpenter ant Camponotus pennsylvanicus (De Geer) in the Commonwealth of Virginia. No active nest thermoregulation was observed: temperatures of galleries, worker bodies, worker clusters, and larval clusters were within 3°C of ambient temperature. Nest temperatures generally fluctuated less rapidly and severely than did ambient temperature; thus, the nest afforded protection from potentially fatal sudden temperature drops. Glycerol, the only polyol cryoprotectant detected, was found in all castes and larvae. Supercooling points were low and ranged from ? 17°C in major workers to ?22°C in larvae. A second heat release peak, occurring around ? 8°C, was seen in all adults, but it was not observed in larvae. This higher temperature peak in adults probably represents the freezing of the gut contents, as adults were found to overwinter with the crop full or partially full. Larvae did not overwinter with liquid food in the gut.